STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfC_1Sensory/regulatory protein RpfC. (631 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
 
0.975
zraS_2
Sensor protein ZraS.
 
0.964
zraS_4
Sensor protein ZraS.
 
0.964
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.962
trg_2
Methyl-accepting chemotaxis protein III.
 
 
 0.953
senX3
Signal-transduction histidine kinase senX3.
 
 
0.952
rpfC_2
Sensory/regulatory protein RpfC.
 
0.950
cheV
Chemotaxis protein CheV.
  
 0.949
cph2_3
Phytochrome-like protein cph2.
 0.947
tap_1
Methyl-accepting chemotaxis protein IV.
 
 
 0.937
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.