STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheY_2Chemotaxis protein CheY. (117 aa)    
Predicted Functional Partners:
cheA_1
Chemotaxis protein CheA.
 
 0.987
cheC
CheY-P phosphatase CheC.
 
 0.981
cheA_2
Chemotaxis protein CheA.
 
 0.974
fliN
Flagellar motor switch protein FliN.
 
 0.966
arlR_3
Response regulator ArlR.
 
  
 0.938
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
 
  
 0.919
cheX
CheY-P phosphatase CheX.
  
 
 0.916
cheY_3
Chemotaxis protein CheY.
 
  
0.913
cheY_4
Chemotaxis protein CheY.
 
  
0.907
cheW_1
Chemotaxis protein CheW.
 
 
 0.904
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.