STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96087.1Hypothetical protein; Belongs to the UPF0311 family. (158 aa)    
Predicted Functional Partners:
hcr
NADH oxidoreductase hcr.
    
 0.937
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 0.849
mop
Aldehyde oxidoreductase.
  
 
 0.836
AQR93751.1
LigB family dioxygenase.
  
 
 0.712
kynB
Kynurenine formamidase.
 
  
 0.698
idi_1
Isopentenyl-diphosphate delta-isomerase.
   
  
 0.658
idi_2
Isopentenyl-diphosphate delta-isomerase.
   
  
 0.658
AQR97917.1
long-chain-fatty-acid--AMP ligase FadD29.
  
 0.653
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
  
 0.651
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
 
 0.648
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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