STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas1CRISPR-associated endonuclease Cas1. (330 aa)    
Predicted Functional Partners:
cas2
CRISPR-associated endoribonuclease Cas2.
 
 
 0.998
AQR96103.1
Hypothetical protein.
 
 
 
 0.987
cas3
CRISPR-associated nuclease/helicase Cas3.
 
  
 0.968
AQR96105.1
Hypothetical protein.
 
   
 0.959
AQR96106.1
Hypothetical protein.
 
   
 0.959
AQR96108.1
CRISPR associated protein Cas6.
 
   
 0.953
AQR96107.1
CRISPR-associated protein Csx8 (Cas_Csx8).
       0.749
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
    
   0.566
flaG
Flagellar protein FlaG.
    
   0.551
ccpN
Transcriptional repressor CcpN.
   
   0.435
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.