STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas1CRISPR-associated endonuclease Cas1. (330 aa)    
Predicted Functional Partners:
cas2
CRISPR-associated endoribonuclease Cas2.
 
 
 0.993
AQR96103.1
Hypothetical protein.
 
 
 
 0.986
cas3
CRISPR-associated nuclease/helicase Cas3.
 
  
 0.963
AQR96106.1
Hypothetical protein.
 
   
 0.953
AQR96108.1
CRISPR associated protein Cas6.
 
   
 0.950
AQR96105.1
Hypothetical protein.
 
   
 0.949
AQR96107.1
CRISPR-associated protein Csx8 (Cas_Csx8).
       0.735
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
    
 
 0.553
flaG
Flagellar protein FlaG.
    
   0.509
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.