STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas3CRISPR-associated nuclease/helicase Cas3. (741 aa)    
Predicted Functional Partners:
cas2
CRISPR-associated endoribonuclease Cas2.
 
  
 0.988
AQR96105.1
Hypothetical protein.
 
 
 0.988
AQR96106.1
Hypothetical protein.
 
 
 0.986
AQR96103.1
Hypothetical protein.
 
  
 0.973
cas1
CRISPR-associated endonuclease Cas1.
 
  
 0.968
AQR96108.1
CRISPR associated protein Cas6.
 
   
 0.967
AQR96107.1
CRISPR-associated protein Csx8 (Cas_Csx8).
       0.814
argR
Arginine repressor; Regulates arginine biosynthesis genes.
      
 0.636
lacZ
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
      
 0.578
pckA_4
Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
      
 0.569
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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