STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96109.1N-acetylmuramoyl-L-alanine amidase. (97 aa)    
Predicted Functional Partners:
mepH_2
Murein DD-endopeptidase MepH precursor.
  
 0.722
ykuD
Putative L,D-transpeptidase YkuD.
    
 0.654
mepH_3
Murein DD-endopeptidase MepH precursor.
  
 
 0.557
yciB_3
Putative L,D-transpeptidase YciB precursor.
    
 0.542
gluP_1
Rhomboid protease GluP.
   
   0.539
yttA
Putative membrane protein YttA.
  
 0.530
AQR96110.1
RNA polymerase factor sigma-70.
       0.492
ykfA_1
Putative murein peptide carboxypeptidase.
    
 0.489
mccF
Microcin C7 self-immunity protein MccF.
    
 0.489
ykfA_2
Putative murein peptide carboxypeptidase.
    
 0.489
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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