STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96118.1Hypothetical protein. (690 aa)    
Predicted Functional Partners:
AQR94611.1
Sugar-specific transcriptional regulator TrmB.
   
    0.706
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase.
   
  
 0.692
dmsB_1
Anaerobic dimethyl sulfoxide reductase chain B.
   
    0.626
dmsB_2
Anaerobic dimethyl sulfoxide reductase chain B.
   
    0.626
AQR96494.1
Type I restriction enzyme EcoKI subunit R.
  
  
 0.524
bcgIA
Restriction enzyme BgcI subunit alpha.
  
  
 0.522
AQR96493.1
Putative type I restriction enzymeP M protein.
  
  
 0.522
mii
3-methylitaconate isomerase.
   
  
 0.457
AQR95882.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.