STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dnaA_3Chromosomal replication initiator protein DnaA. (214 aa)    
Predicted Functional Partners:
AQR96136.1
Hypothetical protein; N-terminal phage replisome organiser (Phage_rep_org_N).
 
  
 0.778
dnaC_2
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.667
dinG
Hypothetical protein; Probable ATP-dependent helicase DinG homolog.
  
   
 0.579
AQR96133.1
Hypothetical protein.
       0.565
spoVT_3
Stage V sporulation protein T.
       0.565
AQR96142.1
Hypothetical protein.
 
 
 0.499
topB_1
DNA topoisomerase 3.
 
   
 0.429
AQR96137.1
Hypothetical protein.
       0.429
pipB2
Secreted effector protein pipB2.
  
     0.424
fliK
Flagellar hook-length control protein FliK.
  
     0.406
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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