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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prkC_2Serine/threonine-protein kinase PrkC. (490 aa)    
Predicted Functional Partners:
stp_1
Serine/threonine phosphatase stp.
 
 0.978
fhaB
FHA domain-containing protein FhaB.
 
 
 
 0.925
AQR94232.1
Hypothetical protein.
  
 
 0.899
AQR94233.1
Hypothetical protein.
  
 
 0.899
garA
Glycogen accumulation regulator GarA.
 
 
 
 0.859
AQR94230.1
FHA domain protein.
   
 
 0.826
AQR94231.1
FHA domain protein.
   
 
 0.797
divIVA
Septum site-determining protein DivIVA.
  
 
 0.739
cap8A_1
Capsular polysaccharide type 8 biosynthesis protein cap8A.
   
 
 0.678
ptk
Tyrosine-protein kinase ptk.
   
 
 0.678
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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