Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
prkC_2Serine/threonine-protein kinase PrkC. (490 aa)    
Predicted Functional Partners:
stp_1
Serine/threonine phosphatase stp.
 
 0.970
fhaB
FHA domain-containing protein FhaB.
 
 
 
 0.929
garA
Glycogen accumulation regulator GarA.
 
 
 
 0.868
AQR94232.1
Hypothetical protein.
  
 
 0.861
AQR94233.1
Hypothetical protein.
  
 
 0.861
AQR94230.1
FHA domain protein.
   
 
 0.837
AQR94231.1
FHA domain protein.
   
 
 0.777
divIVA
Septum site-determining protein DivIVA.
  
 
 0.749
rsgA_2
Putative ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
  
 0.681
cap8A_1
Capsular polysaccharide type 8 biosynthesis protein cap8A.
   
 
 0.638
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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