STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96154.1Cupin domain protein. (158 aa)    
Predicted Functional Partners:
kce
3-keto-5-aminohexanoate cleavage enzyme.
 
    0.608
kynB
Kynurenine formamidase.
  
    0.563
AQR96153.1
Hypothetical protein.
       0.561
AQR98179.1
Hypothetical protein.
  
     0.511
AQR95326.1
Hypothetical protein.
  
     0.433
rbn_2
Ribonuclease BN.
   
    0.424
rbn_3
Ribonuclease BN.
   
    0.424
gltB_2
Ferredoxin-dependent glutamate synthase 1.
       0.424
arsR2
Hypothetical protein; Transcriptional repressor SmtB homolog.
       0.410
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.