STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
racX_2Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family. (232 aa)    
Predicted Functional Partners:
asnO
Asparagine synthetase 3.
    
 0.918
pyrB
Aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.914
ansA
L-asparaginase; Belongs to the asparaginase 1 family.
    
 0.914
aspA_1
Aspartate ammonia-lyase.
    
 0.912
aspA_2
Aspartate ammonia-lyase.
    
 0.912
nadB_1
L-aspartate oxidase.
     
 0.905
racX_1
Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family.
  
  
 
0.903
aspC
Aspartate aminotransferase.
    
 0.903
aspB
Aspartate aminotransferase.
    
 0.903
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
  0.900
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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