Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR96173.1Hypothetical protein. (189 aa)    
Predicted Functional Partners:
AQR96174.1
Hypothetical protein.
       0.794
AQR94866.1
Transcriptional repressor DicA.
  
 
 0.682
AQR95517.1
Helix-turn-helix domain protein.
  
 
 0.682
AQR97456.1
Transcriptional repressor DicA.
  
 
 0.682
AQR97523.1
Tetratricopeptide repeat protein.
 
 
 0.611
AQR97524.1
Anaerobic benzoate catabolism transcriptional regulator.
 
 
 0.560
AQR95018.1
Hypothetical protein.
  
     0.529
AQR92829.1
Transcriptional repressor DicA.
 
 
 0.517
bepA
Beta-barrel assembly-enhancing protease.
  
   
 0.508
AQR92787.1
Anaerobic benzoate catabolism transcriptional regulator.
 
 
 0.484
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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