Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mii3-methylitaconate isomerase. (371 aa)    
Predicted Functional Partners:
hacA_2
Homoaconitase large subunit.
  
 
 0.903
hacA_1
Homoaconitase large subunit.
  
 
 0.836
dmdA_2
2,3-dimethylmalate dehydratase large subunit.
  
 
 0.836
AQR95263.1
Mov34/MPN/PAD-1 family protein.
  
 
 0.699
AQR96979.1
GlcNAc-PI de-N-acetylase.
    
 0.676
AQR93751.1
LigB family dioxygenase.
    
 0.673
AQR96230.1
Amidohydrolase.
 
  
 0.638
AQR94646.1
Amidohydrolase.
 
  
 0.635
ybjL
Putative transport protein YbjL.
       0.624
pphA
Phosphonopyruvate hydrolase.
  
  
 0.614
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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