STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citE_1Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family. (299 aa)    
Predicted Functional Partners:
citF_1
Citrate lyase alpha chain.
 
 
 0.997
citD_1
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
 
 0.995
citX_1
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.
 
 
 0.988
citF_2
Citrate lyase alpha chain.
 
 
 0.988
citC_1
[citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
 
 0.983
citD_2
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
 
 0.981
citX_2
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.
 
 
 0.959
citC_2
[citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
 
 0.957
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase.
 
  
 0.954
citE_2
Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.900
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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