STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcbR_1HTH-type transcriptional regulator McbR. (224 aa)    
Predicted Functional Partners:
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase.
    
  0.700
lldR
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.689
allR
HTH-type transcriptional repressor AllR.
  
  
 0.538
kdgR
Transcriptional regulator KdgR.
  
  
 0.535
mii
3-methylitaconate isomerase.
 
  
 0.506
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
   
   0.498
citC_1
[citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
    
  0.495
gmuR
HTH-type transcriptional regulator GmuR.
  
   
 0.457
tycC
Tyrocidine synthase 3; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.445
bmr3_2
Multidrug resistance protein 3.
  
  
 0.433
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.