STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynZ_3Endo-1,4-beta-xylanase Z precursor. (280 aa)    
Predicted Functional Partners:
gmuC
Oligo-beta-mannoside permease IIC component.
       0.686
bglC_5
aryl-phospho-beta-D-glucosidase BglC.
       0.651
csoR_1
Copper-sensing transcriptional repressor CsoR.
  
  
 0.509
csoR_2
Copper-sensing transcriptional repressor CsoR.
  
  
 0.509
yfcE_2
Phosphodiesterase YfcE.
  
  
 0.468
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 
 0.467
gutB_1
Sorbitol dehydrogenase.
  
 
 0.454
gutB_2
Sorbitol dehydrogenase.
  
 
 0.454
AQR93424.1
NADH oxidase.
  
  
 0.440
fldZ_2
2-enoate reductase FldZ.
  
  
 0.440
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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