Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xynZ_3Endo-1,4-beta-xylanase Z precursor. (280 aa)    
Predicted Functional Partners:
gmuC
Oligo-beta-mannoside permease IIC component.
       0.686
bglC_5
aryl-phospho-beta-D-glucosidase BglC.
       0.651
csoR_1
Copper-sensing transcriptional repressor CsoR.
  
  
 0.619
csoR_2
Copper-sensing transcriptional repressor CsoR.
  
  
 0.619
gloA_2
Lactoylglutathione lyase.
  
 
 0.516
yfcE_2
Phosphodiesterase YfcE.
  
  
 0.501
ycdT_1
Putative diguanylate cyclase YcdT.
  
 
  0.472
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 
 0.465
gutB_1
Sorbitol dehydrogenase.
  
 
 0.462
gutB_2
Sorbitol dehydrogenase.
  
 
 0.462
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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