Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csoR_1Copper-sensing transcriptional repressor CsoR. (91 aa)    
Predicted Functional Partners:
copA_1
Copper-exporting P-type ATPase A.
 
  
 0.932
cdr_2
Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.
     
 0.621
xynZ_3
Endo-1,4-beta-xylanase Z precursor.
  
  
 0.619
AQR96723.1
Enterobactin/ferric enterobactin esterase.
  
  
 0.619
AQR98190.1
Enterobactin/ferric enterobactin esterase.
  
  
 0.619
copZ
Copper chaperone CopZ.
  
  
 0.600
copA_3
Copper-exporting P-type ATPase A.
  
  
 0.577
mhqR_2
HTH-type transcriptional regulator MhqR.
     
 0.563
copA_2
Copper-exporting P-type ATPase A.
 
  
 0.556
mdtN_3
Multidrug resistance protein MdtN; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.502
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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