Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
copA_1Copper-exporting P-type ATPase A. (621 aa)    
Predicted Functional Partners:
csoR_1
Copper-sensing transcriptional repressor CsoR.
 
  
 0.932
copA_2
Copper-exporting P-type ATPase A.
 
 0.893
copZ
Copper chaperone CopZ.
 
 0.864
copA_3
Copper-exporting P-type ATPase A.
 
0.799
AQR92878.1
Heavy-metal-associated domain protein.
  
 0.762
AQR95041.1
Hypothetical protein.
  
 0.761
cadC
Hypothetical protein; Transcriptional repressor SmtB homolog.
 
  
 0.735
arsR2
Hypothetical protein; Transcriptional repressor SmtB homolog.
 
  
 0.727
AQR93632.1
Calcium-transporting ATPase 1.
 
 0.585
yoaB
Calcium-transporting ATPase 1.
 
0.575
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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