STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copA_1Copper-exporting P-type ATPase A. (621 aa)    
Predicted Functional Partners:
csoR_1
Copper-sensing transcriptional repressor CsoR.
 
  
 0.940
copA_2
Copper-exporting P-type ATPase A.
 
 0.922
copZ
Copper chaperone CopZ.
 
 0.880
copA_3
Copper-exporting P-type ATPase A.
 
0.830
AQR95041.1
Hypothetical protein.
  
 0.821
AQR92878.1
Heavy-metal-associated domain protein.
  
 0.798
cadC
Hypothetical protein; Transcriptional repressor SmtB homolog.
 
  
 0.716
arsR2
Hypothetical protein; Transcriptional repressor SmtB homolog.
 
  
 0.706
AQR95641.1
Multicopper oxidase.
  
 
 0.564
mhqR_2
HTH-type transcriptional regulator MhqR.
     
 0.539
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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