Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ftsX_1Cell division protein FtsX. (297 aa)    
Predicted Functional Partners:
ftsE_1
Cell division ATP-binding protein FtsE.
 
 
 0.993
ftsE_2
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 0.972
mepH_2
Murein DD-endopeptidase MepH precursor.
 
 
 
 0.950
iap_2
Putative endopeptidase p60 precursor.
 
 
 0.698
iap_1
Putative endopeptidase p60 precursor.
 
 
 0.693
mepH_1
Murein DD-endopeptidase MepH precursor.
 
 
 0.658
yttA
Putative membrane protein YttA.
   
 
 0.630
mepH_3
Murein DD-endopeptidase MepH precursor.
 
 
 
 0.549
corA_2
Magnesium transport protein CorA.
 
    0.513
yafL
Putative endopeptidase YafL precursor.
 
 
 
 0.506
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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