STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjaB_3Putative N-acetyltransferase YjaB. (142 aa)    
Predicted Functional Partners:
yjaB_1
Putative N-acetyltransferase YjaB.
  
     0.753
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
  
 
 0.672
tsaB
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
 0.608
lytA_15
Autolysin.
       0.476
lrpC_2
HTH-type transcriptional regulator LrpC.
  
    0.467
nfrA2_2
FMN reductase.
  
    0.460
vanT
Serine/alanine racemase.
 
  
 0.447
sufU
Zinc-dependent sulfurtransferase SufU.
   
  
 0.439
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
   
  
 0.437
yoaD
Putative 2-hydroxyacid dehydrogenase YoaD; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
    0.435
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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