STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slyA_8Transcriptional regulator SlyA. (184 aa)    
Predicted Functional Partners:
AQR96252.1
Hypothetical protein; BAAT / Acyl-CoA thioester hydrolase C terminal.
 
     0.793
pepIP
Proline iminopeptidase.
 
   
 0.747
AQR95906.1
Hypothetical protein.
 
     0.586
bmrR_1
Multidrug-efflux transporter 1 regulator.
  
   
 0.505
opuCC
Carnitine transport binding protein OpuCC precursor.
  
  
 0.495
AQR97909.1
Sporulation sigma factor SigF.
  
  
 0.489
AQR96556.1
Hypothetical protein.
  
   
 0.462
AQR97916.1
Hypothetical protein.
  
     0.457
AQR96555.1
Hypothetical protein.
  
   
 0.441
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
  
  
 0.438
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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