STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspA_1Aspartate ammonia-lyase. (465 aa)    
Predicted Functional Partners:
ansA
L-asparaginase; Belongs to the asparaginase 1 family.
  
 
 0.987
aspC
Aspartate aminotransferase.
    
 0.971
aspB
Aspartate aminotransferase.
    
 0.971
asnO
Asparagine synthetase 3.
     
 0.962
nadB_1
L-aspartate oxidase.
  
 0.949
racX_1
Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family.
    
 0.912
racX_2
Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family.
    
 0.912
argH1
Argininosuccinate lyase 1.
     
0.910
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.908
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.908
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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