Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rhaAL-rhamnose isomerase; Belongs to the rhamnose isomerase family. (418 aa)    
Predicted Functional Partners:
rhaB
Rhamnulokinase.
 
 
 0.997
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
 
 0.979
AQR96553.1
RDD family protein.
  
 
 0.875
fucK
L-fuculokinase.
  
 
 0.830
rhaR
HTH-type transcriptional activator RhaR.
 
  
 0.766
fucO
Lactaldehyde reductase.
     
 0.756
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
      
 0.742
AQR97274.1
Hypothetical protein.
  
   
 0.727
AQR94858.1
Hypothetical protein; L-fucose isomerase, C-terminal domain.
      
 0.679
rebO
Flavin-dependent L-tryptophan oxidase RebO precursor.
      
 0.679
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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