Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rhaRHTH-type transcriptional activator RhaR. (323 aa)    
Predicted Functional Partners:
rhaB
Rhamnulokinase.
 
   
 0.822
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
  
 0.766
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
   
 0.687
rhaS_7
HTH-type transcriptional activator RhaS.
  
     0.686
adaA_2
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.654
rhaS_5
HTH-type transcriptional activator RhaS.
  
     0.649
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 0.597
rhaS_6
HTH-type transcriptional activator RhaS.
  
     0.527
melR_1
Melibiose operon regulatory protein.
 
 
 0.524
soxS
Regulatory protein SoxS.
  
     0.521
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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