STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96273.1Putative peptidoglycan binding domain protein. (462 aa)    
Predicted Functional Partners:
epr_1
Minor extracellular protease Epr precursor.
  
 0.820
AQR95777.1
Subtilase family protein.
  
 0.814
AQR93711.1
Subtilase family protein.
     0.790
AQR93712.1
Subtilase family protein.
     0.787
ssbB
Single-stranded DNA-binding protein B.
  
   
 0.598
AQR95547.1
Terminase small subunit.
 
  
 0.589
AQR96274.1
EamA-like transporter family protein.
       0.581
AQR95035.1
Hypothetical protein.
  
     0.545
AQR93304.1
LysM domain protein.
 
  
 0.532
AQR98099.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.528
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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