Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR96282.1Hypothetical protein. (304 aa)    
Predicted Functional Partners:
AQR96283.1
Hypothetical protein.
       0.810
AQR96778.1
Hypothetical protein.
  
     0.645
yunB
Sporulation protein YunB.
  
     0.603
AQR96773.1
Hypothetical protein.
  
     0.548
AQR98243.1
MazG-like family protein.
  
     0.501
yqfC
YabP family protein.
  
     0.490
tepA
Translocation-enhancing protein TepA.
  
     0.469
AQR95641.1
Multicopper oxidase.
  
     0.468
AQR94487.1
Helix-turn-helix domain protein.
  
     0.467
mnmG_1
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG.
  
     0.464
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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