STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydBCytochrome bd-I ubiquinol oxidase subunit 2. (334 aa)    
Predicted Functional Partners:
appC
Cytochrome bd-II ubiquinol oxidase subunit 1.
 0.999
cydD
ATP-binding/permease protein CydD.
 
  
 0.992
cydC1
Putative ABC transporter ATP-binding protein.
 
  
 0.987
hndC_1
NADP-reducing hydrogenase subunit HndC.
    
 0.908
hndC_3
NADP-reducing hydrogenase subunit HndC.
     
 0.893
AQR96296.1
NADH dehydrogenase-like protein.
 
  
 0.886
hndC_2
NADP-reducing hydrogenase subunit HndC.
     
 0.885
urdA
Urocanate reductase precursor.
    
 0.824
nadB_2
L-aspartate oxidase.
     
 0.748
gltD_4
Glutamate synthase [NADPH] small chain.
   
 0.746
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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