Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cheY_3Chemotaxis protein CheY. (141 aa)    
Predicted Functional Partners:
fliN
Flagellar motor switch protein FliN.
  
 
 0.980
cheC
CheY-P phosphatase CheC.
 
 
 0.977
cheA_2
Chemotaxis protein CheA.
 
 0.974
cheA_1
Chemotaxis protein CheA.
 
 0.971
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
  
  
  0.935
arlR_3
Response regulator ArlR.
  
 0.928
cheY_1
Chemotaxis protein CheY.
 
  
0.914
cheY_2
Chemotaxis protein CheY.
 
  
0.913
cheY_4
Chemotaxis protein CheY.
  
  
 
0.911
cheX
CheY-P phosphatase CheX.
  
 
 0.910
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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