STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrgA_2Ammonium transporter NrgA. (415 aa)    
Predicted Functional Partners:
glnB_4
Nitrogen regulatory protein P-II.
 
 0.974
glnB_5
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.919
glnB_1
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 
 0.854
gltB_2
Ferredoxin-dependent glutamate synthase 1.
 
  
 0.833
glnB_3
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 
 0.822
glnB_2
Nitrogen regulatory protein P-II.
 
 
 0.819
glnA_2
Glutamine synthetase.
  
  
 0.523
nifB_3
FeMo cofactor biosynthesis protein NifB.
  
  
 0.503
pdtaR_1
Putative transcriptional regulatory protein pdtaR.
  
  
 0.503
nifH1_1
Nitrogenase iron protein 1; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
  
 0.495
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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