Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR96339.1Hypothetical protein. (528 aa)    
Predicted Functional Partners:
AQR96340.1
Hypothetical protein.
       0.773
AQR97292.1
Polysaccharide deacetylase.
 
 
 0.599
AQR98189.1
Polysaccharide deacetylase.
 
 
 0.591
AQR94405.1
Polysaccharide deacetylase.
 
 
 0.585
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.543
icaB_1
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase precursor.
  
 
 0.519
pgdA_1
peptidoglycan-N-acetylglucosamine deacetylase.
  
 
 0.519
pdaA_1
peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor.
  
 
 0.519
pgaB
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase precursor.
  
 
 0.519
xynA
Endo-1,4-beta-xylanase A precursor; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
 
 0.519
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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