STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96353.1Hypothetical protein. (120 aa)    
Predicted Functional Partners:
AQR96352.1
Putative multidrug export ATP-binding/permease protein.
     0.959
irtA
Iron import ATP-binding/permease protein IrtA.
 
     0.950
marA
Multiple antibiotic resistance protein MarA.
 
  
 0.773
AQR94635.1
Putative ABC transporter ATP-binding protein.
 
     0.772
AQR94636.1
Putative multidrug export ATP-binding/permease protein.
  
     0.732
AQR94631.1
Hypothetical protein.
 
     0.726
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
     0.682
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
 
   
 0.649
grsB
Gramicidin S synthase 2.
  
  
 0.558
AQR96122.1
Hypothetical protein.
  
 
 0.558
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.