STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marAMultiple antibiotic resistance protein MarA. (314 aa)    
Predicted Functional Partners:
AQR96353.1
Hypothetical protein.
 
  
 0.765
adaA_1
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.759
cdhR
HTH-type transcriptional regulator CdhR.
 
 
 
 0.757
araC_3
Arabinose operon regulatory protein.
  
     0.750
irtA
Iron import ATP-binding/permease protein IrtA.
 
  
 0.746
adaA_4
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.730
AQR96352.1
Putative multidrug export ATP-binding/permease protein.
 
  
 0.717
melR_2
Melibiose operon regulatory protein.
  
     0.705
btr_4
HTH-type transcriptional activator Btr.
 
 
 0.697
araC_2
Arabinose operon regulatory protein.
  
     0.694
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.