Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR96359.1Hypothetical protein. (96 aa)    
Predicted Functional Partners:
AQR95777.1
Subtilase family protein.
  
     0.480
AQR93712.1
Subtilase family protein.
  
     0.461
AQR93711.1
Subtilase family protein.
  
     0.455
epr_1
Minor extracellular protease Epr precursor.
  
     0.451
AQR96362.1
Flavodoxin.
 
     0.427
AQR94866.1
Transcriptional repressor DicA.
  
     0.403
AQR95836.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.400
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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