Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pgdA_3peptidoglycan-N-acetylglucosamine deacetylase. (313 aa)    
Predicted Functional Partners:
AQR96373.1
Putative ABC transporter ATP-binding protein.
       0.608
AQR96374.1
Putative multidrug export ATP-binding/permease protein.
       0.608
arnT
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
  
 
 0.519
AQR96062.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
 
 0.519
AQR96339.1
Hypothetical protein.
  
 
 0.519
slyA_9
Transcriptional regulator SlyA.
       0.444
AQR96122.1
Hypothetical protein.
  
  
 0.426
AQR93672.1
Thermophilic serine proteinase precursor.
 
   
 0.421
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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