STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmoS_3Sensor histidine kinase TmoS. (969 aa)    
Predicted Functional Partners:
hupR1_4
Hydrogenase transcriptional regulatory protein hupR1.
 
 
 0.965
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 0.936
rpfC_2
Sensory/regulatory protein RpfC.
 
 0.935
rpfC_1
Sensory/regulatory protein RpfC.
 
 0.931
hupR1_3
Hydrogenase transcriptional regulatory protein hupR1.
 
 
 0.921
hupR1_2
Hydrogenase transcriptional regulatory protein hupR1.
 
 
 0.918
barA_2
Signal transduction histidine-protein kinase BarA.
 
0.890
barA_1
Signal transduction histidine-protein kinase BarA.
 
 0.866
rsbP
Phosphoserine phosphatase RsbP.
 
 
 0.863
hupR1_1
Hydrogenase transcriptional regulatory protein hupR1.
 
 
 0.848
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.