STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96390.1Ankyrin repeat protein. (213 aa)    
Predicted Functional Partners:
AQR96389.1
Tetratricopeptide repeat protein.
  
 0.933
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
 0.871
spoVK
Stage V sporulation protein K.
    
 0.786
AQR95263.1
Mov34/MPN/PAD-1 family protein.
    
 0.779
glpF
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.777
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 0.776
bLIP
Beta-lactamase inhibitor (BLIP).
  
 0.774
AQR96364.1
Hypothetical protein.
    
 0.763
AQR96687.1
Hypothetical protein.
    
 0.763
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.749
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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