Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
rhaS_6HTH-type transcriptional activator RhaS. (253 aa)    
Predicted Functional Partners:
adaA_2
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.769
melR_3
Melibiose operon regulatory protein.
 
 
 
 0.757
adaA_3
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.753
adaA_4
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.741
adaA_1
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.735
araC_3
Arabinose operon regulatory protein.
  
     0.728
cdhR
HTH-type transcriptional regulator CdhR.
 
 
 
 0.725
rhaS_7
HTH-type transcriptional activator RhaS.
  
     0.699
tetD_3
Transposon Tn10 TetD protein.
  
     0.696
araC_2
Arabinose operon regulatory protein.
  
     0.695
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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