STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96447.1Hypothetical protein. (296 aa)    
Predicted Functional Partners:
AQR93770.1
Hypothetical protein.
  
     0.606
AQR97523.1
Tetratricopeptide repeat protein.
  
    0.498
bepA
Beta-barrel assembly-enhancing protease.
 
     0.497
AQR97524.1
Anaerobic benzoate catabolism transcriptional regulator.
  
    0.477
dnaQ
DNA polymerase III subunit epsilon.
  
     0.471
AQR98249.1
Hypothetical protein.
  
     0.468
AQR94794.1
Hypothetical protein.
  
     0.460
AQR92810.1
Hypothetical protein.
  
     0.459
AQR93234.1
Endodeoxyribonuclease RusA.
  
     0.438
AQR98225.1
dUTPase.
  
     0.433
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.