STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrp_2Leucine-responsive regulatory protein. (151 aa)    
Predicted Functional Partners:
livH_3
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
     
 0.778
livF_2
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
       0.773
lptB_2
Lipopolysaccharide export system ATP-binding protein LptB.
       0.773
livH_2
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
       0.773
braC_2
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
     
 0.537
gltB_2
Ferredoxin-dependent glutamate synthase 1.
     
 0.487
dat_1
D-alanine aminotransferase.
     
 0.467
AQR96452.1
Hypothetical protein.
       0.433
lrp_1
Leucine-responsive regulatory protein.
  
   
 0.430
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
  
    0.410
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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