STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livH_2High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (348 aa)    
Predicted Functional Partners:
livF_2
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 0.999
lptB_2
Lipopolysaccharide export system ATP-binding protein LptB.
 
 0.999
livH_3
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
 
 0.998
lptB_3
Lipopolysaccharide export system ATP-binding protein LptB.
 
 0.998
livF_1
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 0.997
livF_3
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 0.997
livH_4
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
0.995
livH_1
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
0.993
braC_2
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
 
 
 0.978
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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