Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hsdSType-1 restriction enzyme EcoKI specificity protein. (393 aa)    
Predicted Functional Partners:
AQR96493.1
Putative type I restriction enzymeP M protein.
 
 
 0.997
bcgIA
Restriction enzyme BgcI subunit alpha.
 
 
 0.992
AQR96494.1
Type I restriction enzyme EcoKI subunit R.
 
 
 0.969
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.604
AQR96496.1
Hypothetical protein.
 
     0.604
AQR96495.1
Hypothetical protein.
 
    0.603
atpF
ATP synthase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
   
 
 0.602
AQR96490.1
Hypothetical protein.
       0.498
AQR95151.1
Fibronectin-binding protein A N-terminus (FbpA).
  
    0.415
helD_1
Helicase IV.
  
 
 0.403
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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