STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiE_5Demethylmenaquinone methyltransferase. (207 aa)    
Predicted Functional Partners:
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 
 0.729
AQR96122.1
Hypothetical protein.
 
  
 0.643
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
     
 0.579
AQR96826.1
Bacterial dynamin-like protein.
  
   
 0.573
AQR96506.1
Hypothetical protein.
       0.565
grsB
Gramicidin S synthase 2.
    
 0.552
crtN
Dehydrosqualene desaturase.
  
 
 0.505
smc_2
Chromosome partition protein Smc.
  
   
 0.471
AQR93592.1
Fibronectin type III domain protein.
  
     0.470
AQR96505.1
HTH domain protein.
       0.455
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.