STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96543.1Putative nucleotidyltransferase. (332 aa)    
Predicted Functional Partners:
rtcB
RNA-splicing ligase RtcB.
 
    0.777
AQR96547.1
60 kDa SS-A/Ro ribonucleoprotein homolog.
 
     0.707
AQR95874.1
Hypothetical protein.
  
     0.669
AQR95882.1
Hypothetical protein.
 
     0.660
AQR96403.1
Hypothetical protein.
 
     0.653
AQR96551.1
Hypothetical protein.
 
     0.651
AQR94238.1
Hypothetical protein.
  
     0.646
AQR93114.1
Hypothetical protein.
  
     0.623
AQR94686.1
Hypothetical protein.
  
     0.620
gpP
Phage late control protein Gpd.
  
     0.618
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.