STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96547.160 kDa SS-A/Ro ribonucleoprotein homolog. (483 aa)    
Predicted Functional Partners:
rtcB
RNA-splicing ligase RtcB.
 
     0.717
AQR96543.1
Putative nucleotidyltransferase.
 
     0.707
kptA
RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
  
     0.699
AQR96403.1
Hypothetical protein.
  
     0.678
AQR95882.1
Hypothetical protein.
  
     0.673
AQR94256.1
Hypothetical protein.
  
     0.656
AQR96122.1
Hypothetical protein.
 
     0.457
AQR96551.1
Hypothetical protein.
 
     0.447
manA
Beta-mannanase/endoglucanase A precursor.
  
     0.424
draG
ADP-ribosyl-[dinitrogen reductase] glycohydrolase.
  
     0.423
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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