Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
opuCCCarnitine transport binding protein OpuCC precursor. (524 aa)    
Predicted Functional Partners:
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
 
 0.999
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.944
yecS
Inner membrane amino-acid ABC transporter permease protein YecS.
     
 0.914
glnH_4
Glutamine-binding periplasmic protein precursor.
     
 0.871
glnH_5
Glutamine-binding periplasmic protein precursor.
     
 0.871
AQR96936.1
Cobalt-dependent inorganic pyrophosphatase.
    
 0.858
AQR97666.1
CBS domain protein.
    
 0.808
mngR
mannosyl-D-glycerate transport/metabolism system repressor MngR.
 
     0.741
glnP_2
Putative glutamine ABC transporter permease protein GlnP.
    
 0.703
glnP_1
Glutamine transport system permease protein GlnP.
     
 0.702
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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