STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCCCarnitine transport binding protein OpuCC precursor. (524 aa)    
Predicted Functional Partners:
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
 0.999
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.949
yecS
Inner membrane amino-acid ABC transporter permease protein YecS.
     
 0.903
glnH_4
Glutamine-binding periplasmic protein precursor.
     
 0.854
glnH_5
Glutamine-binding periplasmic protein precursor.
     
 0.854
AQR96936.1
Cobalt-dependent inorganic pyrophosphatase.
    
 0.783
mngR
mannosyl-D-glycerate transport/metabolism system repressor MngR.
 
     0.761
AQR97666.1
CBS domain protein.
    
 0.759
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.739
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.739
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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