STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCAGlycine betaine/carnitine/choline transport ATP-binding protein OpuCA. (378 aa)    
Predicted Functional Partners:
opuCC
Carnitine transport binding protein OpuCC precursor.
 
 0.999
mngR
mannosyl-D-glycerate transport/metabolism system repressor MngR.
 
   
 0.778
yjjK_1
Putative ABC transporter ATP-binding protein YjjK.
  
  
 0.573
thrC
Threonine synthase.
   
    0.551
trpS2
tryptophan--tRNA ligase 2; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.459
AQR97822.1
Hypothetical protein.
   
    0.447
tcyJ
L-cystine-binding protein TcyJ precursor.
     
 0.430
tcyA_1
L-cystine-binding protein TcyA precursor.
     
 0.430
yecS
Inner membrane amino-acid ABC transporter permease protein YecS.
     
 0.415
glnH_4
Glutamine-binding periplasmic protein precursor.
     
 0.415
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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