Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mngRmannosyl-D-glycerate transport/metabolism system repressor MngR. (208 aa)    
Predicted Functional Partners:
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
 
   
 0.778
opuCC
Carnitine transport binding protein OpuCC precursor.
 
     0.741
melR_1
Melibiose operon regulatory protein.
 
  
 0.667
adaA_1
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
  
 0.609
btr_4
HTH-type transcriptional activator Btr.
  
  
 0.609
adaA_2
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
  
 0.609
adaA_3
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
  
 0.609
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.602
AQR94765.1
Hypothetical protein.
 
  
 0.547
pucF
Allantoate amidohydrolase.
 
   
 0.531
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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