STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ssuC_5Putative aliphatic sulfonates transport permease protein SsuC. (255 aa)    
Predicted Functional Partners:
tauB
Taurine import ATP-binding protein TauB.
 
 0.982
AQR96563.1
Putative thiamine biosynthesis protein.
 
 0.978
AQR95284.1
Putative thiamine biosynthesis protein.
 
 0.951
cmpD
Bicarbonate transport ATP-binding protein CmpD.
 
 0.927
ssuA
Putative aliphatic sulfonates-binding protein precursor.
 
 0.911
tauA
Taurine-binding periplasmic protein precursor.
 
 
 0.907
ssuB_1
Aliphatic sulfonates import ATP-binding protein SsuB.
 
 0.894
ssuB_3
Aliphatic sulfonates import ATP-binding protein SsuB.
 
 0.880
ssuB_2
Aliphatic sulfonates import ATP-binding protein SsuB.
 
 0.860
AQR93821.1
ABC transporter, phosphonate, periplasmic substrate-binding protein.
  
 0.839
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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