STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96580.13-demethylubiquinone-9 3-methyltransferase. (294 aa)    
Predicted Functional Partners:
AQR96581.1
Hypothetical protein; Activator of Hsp90 ATPase homolog 1-like protein.
 
    0.899
ycgJ_1
Putative methyltransferase YcgJ.
   
    0.676
fra
Intracellular iron chaperone frataxin.
 
     0.619
sttH_1
Streptothricin hydrolase.
   
    0.569
sttH_2
Streptothricin hydrolase.
   
    0.569
folA_2
Dihydrofolate reductase.
 
    0.557
AQR94990.1
Acetyltransferase (GNAT) family protein.
 
    0.510
AQR95952.1
Hypothetical protein.
  
  
 0.503
AQR97586.1
Hypothetical protein.
 
    0.502
AQR95418.1
Rifampin ADP-ribosyl transferase.
 
     0.458
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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