STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytA_18Autolysin. (339 aa)    
Predicted Functional Partners:
AQR97052.1
Beta-monoglucosyldiacylglycerol synthase.
  
 
 0.521
AQR96606.1
Transglutaminase-like superfamily protein.
  
     0.515
celE
Endoglucanase E precursor.
  
    0.475
AQR97741.1
Hypothetical protein.
  
     0.473
AQR93908.1
Hypothetical protein; Belongs to the UPF0473 family.
  
     0.461
toxA_6
Toxin A.
  
  
 0.454
AQR98167.1
Hypothetical protein.
  
     0.451
arnC_1
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
   
 
 0.440
AQR94021.1
ST7 protein.
  
     0.421
smc_2
Chromosome partition protein Smc.
  
     0.411
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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